ACS Summer School on Green Chemistry and Sustainable Energy 2018

ACS Summer School on Green Chemistry and Sustainable Energy 2018

By Kevin Szkop and Rachel Hems

The Colorado School of Mines in Golden, CO is a wonderful campus with cutting-edge facilities and a great place to spend a week with 60 young scientists interested in green chemistry. This is where the ACS Summer School on Green Chemistry and Sustainable Energy was held from July 10 – 17. The group consisted of chemists and chemical engineers from North and South America, all with unique perspectives, experiences, and attitudes towards sustainability. Below is a photo of our awesome class!

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The 2018 ACS Summer School on Green Chemistry and Sustainable Energy class

The program consisted of technical and professional development sessions. A highlight was a life cycle assessment group project and presentation, led by Prof. Philip Jessop from Queen’s University. During Professor Jessop’s lectures, we learned how to think about the “greenness” of a process, and how this often-nebulous concept is best used as a comparative tool. While every process likely has downfalls, using the green chemistry principles and metrics allowed us to think critically about which process has the least downfalls, and how to address these in our work. The assignment included a group project, during which groups of students had to evaluate the merits and drawbacks of 5 synthetic routes to the same product. In this context, we learned that it is not only the reagents that go into a flask, but everything that happens behind the scenes, including shipping of reagents, the type of waste generated, amount of energy consumed, and much, much more. As a synthetic chemist (Kevin), it really made me think about solvent consumption and work up techniques in my own work!

In addition to learning about green chemistry and sustainable energy, there were some great professional development lectures and activities. Dr. Nancy Jenson, the program manager for the Petroleum Research Fund at the ACS, gave an engaging talk on tips for writing research proposals and common mistakes that are made. While she gave examples from her experience at the Petroleum Research Fund, there were many lessons that could be applied to any type of proposal writing.

Another great professional development lecture was given by Joerg Schlatterer from the American Chemical Society. He gave an overview of the ACS’s many resources for young chemists, such as the Chem IDP website for career planning, workshops for prospective faculty organized by the Graduate & Postdoctoral Scholars Office, and the new Catalyzing Career Networking program at ACS National Meetings. As part of the career planning case study, we took some time to make some SMART goals for ourselves for the next two years. I (Rachel) found it’s really helpful to have others share their goals and give suggestions for yours to make them the SMARTest they can be!

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Rafting down Clear Creek

Of course, we also had time to have fun! On the Saturday (also Rachel’s birthday!) we went white water rafting on Clear Creek. The river is mountain fed, so it was very cold, but it was a beautiful warm and sunny day! We had a great time rafting down the river, with a quick stop to jump in for a swim. It was a great way to spend my birthday! Throughout the week-long summer school, there was a decent amount of free time to enjoy the sunshine and the sights around Golden. Some of the fun things we got to do were swim in and raft down the river that goes through ‘downtown’ Golden, an early morning hike up the South Table Mountain, tour the Coors Brewery, and get to know all the other awesome chemists!

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Kevin and Rachel enjoying the Golden nightlife after a long day of learning!

We highly recommend attending this summer school. It is a great opportunity to learn and to meet great people who care about sustainable chemistry! Read more about past GCI members that have attended the ACS Summer School in 2014 and  2017.

More information on the summer school and how to apply can be found online here.

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Water Extract of Banana: The Tasty Fruit for Efficient Green Chemistry

Water Extract of Banana: The Tasty Fruit for Efficient Green Chemistry

By Matt Gradiski, Member-at-Large for the GCI

Bananas. They’re a fantastic healthy snack, delicious to bake into bread or flavour medicine, and even the choice speak-and-spell for singer Gwen Stefani. Now, thanks to two excellent reports in 2015, an efficient medium for two sophisticated organic transformations can be added to its list of uses.

Published in Green Chemistry in January 2015, researchers were able to perform Suzuki-Miyaura (SM) cross-coupling in a neat solution of water extract of banana (WEB).1 WEB is made by simply drying the peel of a banana, burning the dried remains, and extracting the ashes with water (Figure 1). What results is a brown-orange liquid holding tremendous catalytic capability.

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Figure 1. Preparation of WEB solution [1]

 Typically, SM coupling requires the addition of external ligands, base, or other reaction promoters that can often be very expensive. The reaction is known to be able to take place in aqueous media; however, organic solvents are usually the more common choice. While the SM reaction still requires a noble-metal palladium catalyst, using a WEB medium for this reaction completely replaces the use of external additives and organic solvents (Figure 2). The only thing better than being able to do your reaction in water, is to do your reaction in water quickly! The longest reported reaction time using this system was 20 minutes, with times as a low as 5 minutes, and yields as high as 99%, all being carried out at room temperature for 12 different products.

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Figure 2. Example of Suzuki-Miyaura coupling in WEB

Extending the scope of WEB’s usefulness, a report in July of the same year in Green Chemistry showed that the medium can also be used effectively for the catalytic Dakin reaction.2 This reaction converts an ortho- or para-hydroxy aromatic aldehyde or ketone into its corresponding benzenediol through reaction with hydrogen peroxide in base (Figure 3).

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Figure 3. Proposed Dakin oxidation mechanism catalyzed by WEB [2]

Similar to SM coupling, the Dakin reaction requires addition of an external base, typically sodium or potassium hydroxide. However, it was found in the study that no external base was required when the reaction was carried out in WEB. The WEB solution was effective enough to initiate the reaction via deprotonation of hydrogen peroxide, generating the nucleophilic hydroperoxide anion that is required for the reaction to take place. All 16 reactions screened in the study were carried out at room temperature with the use of no external additives or organic solvent. Reaction times were as long as 60 minutes, and isolated yields ranged from 90-98%!

But what makes WEB such an efficient medium for green chemistry? Although the exact identity of the active species is currently unknown, the two aforementioned studies gathered valuable information about what could be promoting their reactions from a report in 2007.3 It was identified that banana peels contain a large amount of potassium and sodium carbonate as well as sodium chloride and other trace elements. It was speculated that the high concentration of alkali metal carbonates in WEB was responsible for the acceleration of these organic transformations.

So, the next time you are finished having a banana, don’t monkey around and throw it away! Give it to a chemist in need, it may help them out more than you think!

 

References

1)         P. R. Boruah, A. A. Ali, B. Saikia and D. Sarma, Green Chem., 2015, 17, 1442–1445. DOI:10.1039/C4GC02522A

2)         B. Saikia, P. Borah and N. Chandra Barua, Green Chem., 2015, 17, 4533–4536. DOI:10.1039/C5GC01404B

3)         D. C. Deka and N. N. Talukdar, IJTK, 2007, 6 (1), 72-78.

 

Figures from Boruah et al. 2015 and Saikia et al. 2015 reproduced with the permission of the Royal Society of Chemistry.

Veggie (Scrap) Tales – Are plant-based polymers the answer to our plastic conundrum?

By Molly Sung, Secretary for the GCI

Plastic is one of the most ubiquitous materials on the planet. Everything from our toothbrushes, to pens, take-out containers, or parts used in the automotive or aeronautic industries are made from plastic. What started off as a convenient and cheap alternative to traditional materials has become a global reliance – and it’s taking its toll.

Traditional plastics are petroleum-based – and as we know, petroleum is a non-renewable resource and its extraction, processing, and use contributes to environmental pollution and climate change. When plastic bags were first gaining popularity in the 1950s and 60s, one of the selling points of using plastic bags was that they were more durable and long-lasting than paper,1 but that’s also exactly the problem. Plastic doesn’t degrade easily like paper does, so it starts to accumulate. This accumulation in landfills and, unfortunately, our waters has spurred research in the development of plastics that can break down over time.

An example of a biodegradable plastic is polylactic acid (PLA). The starting material, lactic acid, can be obtained through fermentation of crops such as sugarcane or corn, which can undergo condensation to form short chains (oligomers). Next, these oligomers undergo depolymerization to form lactide, a cyclic ester, which is then polymerized with the help of a catalyst to give PLA, shown in Figure 1.2

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Figure 1. Synthesis of polylactic acid (PLA), a biodegradable plastic, from lactic acid.

PLA performs comparably to the popular commercial plastic polyethylene terephthalate (PET, labelled with the “1” inside the recycling symbol). It is currently used in food packaging (such as disposable cups), as medical implants,2 and has also found renewed popularity as a common filament for 3D printing, but it’s not without its problems. The monomer, lactide, can have varying stereochemistry which influences the final polymer product and the mechanical properties of the plastic. Significant strides have been made in this area of research, but possibly the biggest barrier to using PLA is the competition with the food industry for the starting material. This is incidentally the same problem many first-generation biofuels ran into. But what if we could take food waste and turn it into usable plastics?

While there are some technologies being developed to use non-food materials like cellulose as a bioplastic, many of these methods require fairly harsh reactions. A gentler, water-based approach to make a cellulose-based plastic was recently reported by a research team from the Italian Institute of Technology and the University of Milano-Bicocca in the journal Green Chemistry.3

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Figure 2. Image of the bioplastic films made from different vegetable powders: (A) carrot, (B) parsley, (C) radicchio, (D) cauliflower. Reproduced from Perotto et al. [3].

This new technique uses waste from the food-industry, including carrot, cauliflower, radicchio, or parsley waste. The vegetable matter must first be dried and ground into a micronized powder, but otherwise no further processing or purification is required to make the veggie waste usable in this process. To make the plastic films, the researchers simply mixed the vegetable powder with a weakly acidic solution (5 % HCl w/w) at 40 °C, then removed any residual acid through dialysis and let the suspension dry in a petri dish for 48 hours. This process has a 90 % conversion of the vegetable waste into bioplastic (by weight) and the product has very promising mechanical properties (Figure 2).

In particular, in measuring the elasticity and tensile strength of the bioplastic films, it was found that the carrot film had comparable properties to polypropylene (commonly used for rigid plastic containers – otherwise referred to as number “5” plastics).

The researchers also tested important factors for plastics being considered for food storage applications. First, they studied whether the films would interact with water. The parsley film was found to absorb water fairly readily. Conversely, the carrot filmed exhibited hydrophobic behaviour – an uncommon characteristic for vegetable-derived plastics. This hydrophobic behaviour means that the moisture from food is unlikely to soak through the plastic film or structurally damage it.

One very interesting property of the radicchio waste is that it is rich in anthocyanins. Anthocyanin is what gives radicchio, red cabbage, and beets their vibrant red colour. More importantly, anthocyanins are known anti-oxidants and materials rich in these anti-oxidants are currently being investigated as food-packaging materials that extend the shelf-life of food.4 Unfortunately, these vegetable films tested to be fairly permeable to oxygen, which would offset any benefit from the antioxidant-rich radicchio film. However, the researchers showed that if the vegetable waste was blended with polyvinyl alcohol (PVA), the oxygen permeability can be reduced significantly and was even an improvement on the pure PVA.

Lastly, and very importantly, the researchers tested for the biodegradability of the films. To test the rate of biodegradation, the researchers submerged the carrot film in seawater to measure the rate of oxygen consumption by the seawater organisms responsible for the biodegradation of the film. They found that the film decomposed fairly quickly in 15 days.

These scientists have now demonstrated a very mild process in the synthesis of bioplastics that have mechanical properties similar to one of the most common commercial plastics. They have also made a plastic that, because of the presence of anthocyanins, may have applications in food storage that can help reduce food-waste.

What is especially promising about these bioplastics is how little purification of the vegetable waste is required to make them; however, there are improvements to be made. A major obstacle these materials will face is their performance in wet or humid environments as well as scaling up to an industrial process. It is clear that we need more sustainable materials and these vegetable waste plastics present an exciting new avenue towards biodegradable bioplastics.

 

References

  1. Laskow. How the Plastic Bag Became So Popular. The Atlantic [Online] 2014. https://www.theatlantic.com/technology/archive/2014/10/how-the-plastic-bag-became-so-popular/381065
  2. Gupta et al., J. Prog. Polym. Sci. 2007, 32, 4, 455-482. DOI: 10.1016/j.progpolymsci.2007.01.005
  3. Perotto et al., Green Chemistry, 2018, 20, 804-902. DOI: 10.1039/C7GC03368K
  4. N. Tran, et al., Food Chemistry, 2017, 216, 324-333. DOI: 10.1016/j.foodchem.2016.08.055

 

Figure from Perotto et al. 2018 reproduced with the permission of the Royal Society of Chemistry.

Glycoside Hydrolases: A Doorway to Alternative Energy

Glycoside Hydrolases: A Doorway to Alternative Energy

By Namrata Jain, GreenChem UBC (Invited post!)

Biofuels, in particular bioethanol, are widely accepted as carbon-neutral fuels1, meaning they have no net greenhouse gas emissions; the amount of carbon dioxide produced during their combustion equals the amount fixed from the atmosphere while the plants grow. These fuels provide an alternative to the current outrageous usage rate of fossil fuels. Plant biomass, a renewable and abundantly available natural resource, is used as the main source for bioethanol production.

In order to produce bioethanol, polymeric plant carbohydrates (polysaccharides) must be broken down into the corresponding monosaccharides, followed by fermentation via yeasts. Typically, starch-rich crops such as corn and sugarcane are the most heavily used as carbohydrate sources.

However, since utilization of these starchy sugars in bioethanol production competes with their use as food crops, there has been a recent shift towards utilization of lignocellulosic biomass.1 Lignocellulosic biomass includes cellulose and hemicelluloses present in non-edible parts of plants, and hence reduces dependence on edible, starch-rich crops.

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Figure 1. Structure of a plant cell wall, highlighting xyloglucan, a particular hemicellulose of interest. [2]

Lignocelluloses form an important part of the plant cell wall (Figure 1) and are composed of cellulose, hemicelluloses (such as xyloglucan), and polyaromatics called lignin. These polymers are tough and more difficult to break down to release monosaccharides, as compared to starch. Nevertheless, lignocelluloses are the most abundant biological material on earth and are an untapped resource.1

The complete utilization of this biomass, however, is hindered by the structural complexity of plant cell walls, arising from the heavy crosslinking between hemicelluloses, celluloses, and lignin within, making it difficult to access the degradable polysaccharidic components. Hemicelluloses, such as xyloglucan (Figure 2A), can make up 15-50 % of these lignocellulosic materials and have been the focus of research for optimization to use as a biofuel.

To efficiently break down the lignocelluloses, many types of enzymes are needed. Glycoside hydrolases, one such group of carbohydrate active enzymes, have proven to be very efficient in the hydrolysis of many complex polysaccharides.3 However, more details about the chemical structure of the enzymes, as well as a reliable way of comparing the kinetic activity of various enzymes has been of interest to researchers in the field.

One of the ways of quantifying the kinetic details of such enzymes is by designing chemical probes such as one shown in Figure 2B. Such probes are chemically very similar in structure to the polysaccharide of interest (eg. Figure 2A), and hence can subtly fit into the active site of the enzyme and manipulate its rate of catalysis in a controlled and quantifiable way, making comparisons between enzymes’ kinetics possible.

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Figure 2. Structures of (A) xyloglucan; and (B) xyloglucan oligosaccharide based probe.

These probes can also assist in the crystal structure formation of the enzyme providing key details about the nature of interactions between the enzyme and corresponding polysaccharide and the specific amino acids responsible for its catalytic activities (Figure 3).

The Brumer group at the University of British Columbia4 has recently designed one such probe (Figure 2B) specific for xyloglucan active enzymes (xyloglucanases) by chemically modifying a xyloglucan-derived heptasaccharide. This probe was able to provide valuable information about the kinetics, specificity, as well as structural details of a newly discovered xyloglucanase PbGH5, which is secreted by a microbe residing in the intestinal system of ruminants such as cows.

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Figure 3. Crystal structure of the characterised endoxyloglucanase in complex with the inhibitor. [4]

As more research goes into the design and improvement of such probes, we would be able to develop novel enzyme cocktails that can make bioethanol production more economically and practically viable, leading to gradual decrease in our dependence on fossil fuels for our energy needs.

 

References:

  1. Scheffran J. The Global Demand for Biofuels: Technologies, Markets and Policies. In: Biomass to Biofuels: Strategies for Global Industries. Blackwell Publishing Ltd.; 2010:27-54. doi:10.1002/9780470750025.ch2.
  2. https://en.wikipedia.org/wiki/Cell_wall#Plant_cell_walls
  3. Henrissat B, Davies G. Structural and sequence-based classification of glycoside hydrolases. Curr Opin Struct Biol. 1997;7(5):637-644. doi:http://dx.doi.org/10.1016/S0959-440X(97)80072-3.
  4. McGregor N, Morar M, Fenger TH, et al. Structure-function analysis of a mixed-linkage β-glucanase/xyloglucanase from key ruminal Bacteroidetes Prevotella bryantii B14. J Biol Chem. 2015;291(3):1175-1197. doi:10.1074/jbc.M115.691659.

Greener Alternatives in Organic Synthesis Involving Carbonyl Groups: Dethioacetalization and Iron-Catalyzed Transfer Hydrogenation

By Diya Zhu, Member-at-Large for the GCI

A carbonyl functionality is a functional group composed of a carbon atom double-bonded to an oxygen atom (C=O). It is ubiquitous in nature as well as widely employed and studied in all areas of chemistry. In this blog, we will explore two common synthetic processes involving carbonyl groups with greener alternative reagents.

Dethioacetalization with NH4I

Carbonyl-containing compounds are abundant in nature, expressing a wide range of functionality. As targeted in many natural and non-natural product syntheses, the protection and deprotection of the carbonyl functional groups are critical and often require multiple steps. Common carbonyl protecting groups are dithianes and dithiolanes due to their easy accessibility and high stability under acidic/basic conditions. The traditional dethioacetalization is generally performed utilizing heavy-metal salts such as mercury(II) chloride, silver(II) nitrite, ceric ammonium nitrate, and selenium dioxide, of which the resulting waste is very toxic to the environment.1

From 1989 to 2005, serval hypervalent iodine compounds such as bis(trifluoroacetoxy)-iodobenzene (BTI), Dess-Martin periodinane (DMP), and o-iodoxybenzoic acid (IBX) have been employed as dethioacetalization reagents due to their low toxicity, high selectivity, and metal-ion free nature. While these reagents have a smaller environmental impact, they are still required in excess amount, which is economically wasteful.2, 3

Finally, in 2011, Ganguly and Mondal reported a mild, efficient, and greener dethioacetalization protocol using a catalytic amount of ammonium iodide with hydrogen peroxide.3 In this work, the deprotection was carried out with 10 mol% of nontoxic ammonium iodide and 30% hydrogen peroxide as the terminal oxidizer in an aqueous medium in the presence of sodium dodecylsulfate (SDS). This protocol (Figure 1) shows a high yield (>90%) deprotection of 1,3–dithianes and dithiolanes of activated aromatics and even deactivated and sterically encumbered substrates. The high tolerance, low environmental impact, mildness, operational simplicity, high throughput, and generality of the protocol make it an intriguing alternative.

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The greener dethioacetalization protocol by Ganguly and Mondal. [3]

Iron-catalyzed transfer hydrogenation with formic acid

Various catalyst systems for the reduction of carbonyl compounds have been established, such as Meerwein–Ponndorf–Verley (MPV) reduction.4 However, only a handful of protocols were reported for the transfer hydrogenation of aldehydes due to the difficulty in controlling the chemoselectivity in the process.

In these conversional protocols of transfer hydrogenation, many side-reactions (for example, aldol condensations) take place after deprotection by the base. The heavy-metal catalysts (such as rhodium, iridium, and ruthenium complexes) are expensive and often poisoned by the substrates, resulting in non-recyclable catalysts and many side-products. In addition, the hydrogenation of carbon-carbon double bonds (C=C) and aldehydes compete, resulting in poor chemoselectivity.5,6 Due to these drawbacks, there was a significant desire for more efficient and environmentally benign catalytic systems.

In the last decade, iron catalysts have received much attention due to their nontoxic, abundant, and inexpensive qualities. In 2013, Beller and his colleagues published an efficient iron-based catalyst system for the highly selective transfer hydrogenation of aldehydes under mild conditions.6 In this system, they suggested that iron-tetraphos complexes [(Fe(BF4)•6H2O and P(CH2CH2PPh2)3) are able to catalyze a wide range of substrates such as aromatic, aliphatic, and α,β-unsaturated aldehydes to the corresponding alcohols in excellent yields (>99%). Without the presence of a base, formic acid is used as a cheap, environmental friendly, and easy to handle hydrogen source. In addition, no significant amounts of side products were observed.

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The iron-catalyzed transfer hydrogenation with formic acid. [6]

In addition to these two examples, many chemical companies promote the idea of green chemistry and offer more green choices to reduce environmental impact without compromising the quality and efficacy of research.7

 

References:

  1. J. Corey, B. W. Erickson, Journal of Organic Chemistry 36 (1971), 3553; E. Vedejs, P. L. Fuches, Journal of Organic Chemistry 36 (1971), 366.
  2. S. Kirshnaveni, K. Surendra, Y. V. D. Nageswar, K. R. Rao, Synthesis 15 (2003), 2295. DOI: 10.1055/s-2003-41055
  3. C. Ganguly, P. Mondal, Synthetic Communications 41 (2011), 2374. DOI: 10.1080/00397911.2010.502995
  4. Gladiali, E. Alberico, Chemistry Society Reviews 35 (2006) 226. DOI: 10.1039/B513396C
  5. S. M. Samec, J.-E. Bäckvall, P. G. Andersson, P. Brandt, Chemistry Society Reviews 35 (2006), 237. DOI: 10.1039/b515269k
  6. Wienhöfer, F. A. Westerhaus, K. Junge, M. Beller, Journal of Organometallic Chemistry 744 (2013) 156. DOI: 10.1016/j.jorganchem.2013.06.010
  7. Sigma Aldrich Alternative Product Page. http://www.sigmaaldrich.com/chemistry/chemistry-products.html?TablePage=119262253 (accessed Oct 15, 2017).

Green Chemistry at CSC2017 – The 100th Canadian Chemistry Conference and Exhibition

By Kevin Szkop and Alex Waked

This year, the GCI partnered with the Chemical Institute of Canada (CIC), the organizing body of the CSC2017, to be closely involved in various aspects of Canada’s largest chemistry meeting.

In collaboration with GreenCentre Canada and CIC, the GCI organized a Professional Development Workshop as part of the CSC2017 program. This event consisted of four components:

The green chemistry crash course, led by Dr. Laura Reyes. Laura is a founding member of the GCI, and is now working in marketing & communications with GreenCentre Canada.

A case study, led by Dr. Tim Clark, Technology Leader at GreenCentre Canada. The case study gave attendees a unique opportunity to learn about some projects that GreenCentre has been developing and in collaboration with peers, learn how to find applications for new intellectual property (IP) and how to make contacts within relevant companies.

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Dr. Tim Clark leading the GreenCentre Canada Industry Case Study

Career panel discussion, sponsored by Gilead, featuring members of academia and industry.

A coffee mixer for an opportunity for informal networking.

 

Supplementary to the Professional Development Workshop, the GCI organized a technical session, co-hosted by the Inorganic, Environmental, and Industrial sections of the conference. This new symposium, entitled “Recent Advances in Sustainable Chemistry”, brought together students, professors, industry, and government speakers to showcase a diverse and engaging collection of new trends in green and sustainable chemistry practices across all sectors of chemistry. Highlighted talks included Dr. Martyn Poliakoff from the University of Nottingham, also a CSC2017 Plenary Lecturer, Dr. David Bergbreiter from Texas A&M University, and Dr. William Tolman from the University of Minnesota.

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Dr. Martyn Poliakoff teaching the audience about NbOPO4 acid catalysts found in Brazilian mines

Dr. Bergbreiter’s lecture was an engaging one. His enthusiastic approach to the use of renewable and bio-derived polymers as green solvents was captivating to both industrial and academic chemists.

Dr. Martyn Poliakoff, a plenary speaker at the conference, gave a phenomenal talk during the first day of the symposium. His charismatic style complimented perfectly the cutting-edge research ongoing in his group at the University of Nottingham. Particularly interesting was the use of flow processes in tandem with photochemistry to yield large quantities of natural products useful in the drug industries.

Dr. Tolman’s talk was of interest to essentially anyone working in an academic environment, especially for student run groups, like the GCI, with both academic interests as well as safety awareness initiatives. In the first part of the talk, synthetic and mechanistic studies of renewable polymers were discussed. The second part shifted focus to student-led efforts to enhance the safety culture in academic labs, which stood out from most of the other talks in our symposium.

One highlight was a group of graduate students at the University of Minnesota organizing a tour of Dow Chemicals to observe the work and safety codes in an industrial setting, which they used as a lesson to bring back to their own research labs. This caught the eye of most of the GCI members, which inspired us to organize a similar day trip in the future.

In further efforts to make our symposium accessible to undergraduate and graduate students, the GCI partnered with GreenCentre Canada to award five Travel Scholarships to deserving students from across Canada to provide financial aid to participate in the conference.

We thank all of our speakers, both national and international, for their participation in the program. It was a great success!

 

Green Chemistry Principle #8: Reduce Derivatives

By Trevor Janes, Member-at-Large for the GCI

8. Unnecessary derivatization (e.g. installation/removal of use protecting groups) should be minimized or avoided if possible, because such steps require additional reagents and can generate waste.

In Video #8, Cynthia and Devon look at one common example of derivatization, which is the use of protecting groups in chemical reactions. To help illustrate the concept of a protecting group, they use toy building blocks.

In this blog post, I will use cartoons such as the one shown below (a specific example of the use of protecting groups will be shown at the end of this post).

Principle 8 - unselective reaction

Figure 1 An unselective reaction.

In Figure 1, the starting material contains two reactive sites, represented by U-shaped slots. We only want the slot on the right to react with the reagent, shown as red circles. The starting material is reacted with the reagent in order to make the desired product, but an undesired product also forms, because both U-shaped slots react with the red circle. In other words, Figure 1 shows an unselective reaction because a mixture of products is made.

Formation of the undesired product can be avoided by carrying out a protection reaction before using the red reagent, and then carrying out a final deprotection reaction. This sequence of reactions is shown in Figure 2.

Principle 8 - selectivity through protecting groups

Figure 2 A selective reaction through the use of a protecting group, which temporarily blocks the reactive site on the left side. 

 

Figure 2 shows how a selective reaction is traditionally done – through the use of a temporary block, known as a protecting group. The starting material can be protected by blocking one of the reactive sites, represented by the blue rectangle covering the U-shaped slot on the left. This intermediate only has one reactive site left, so the second reaction with the red reagent can only happen at the empty U-shaped slot on the right. To get the same desired product as in Figure 1, the third and final deprotection step is carried out, which removes the protecting group.

Principle 8 - waste from protecting groups

Figure 3 The waste created by all three reactions in Figure 2.

Even though the product from Figure 2 is the desired product, we had to do three reactions to only make one change, which is inefficient. Also, each step generates waste products (shown underneath each reaction arrow in the above cartoon) , which are depicted in Figure 3.

Protecting groups are a useful tool that chemists use to make the molecules, because we often need to carry out selective reactions on a molecule that has multiple of the same reactive sites. However, as we have talked about here, they are also inefficient and wasteful.

An active area of research is the development of more selective reactions, which eliminate the need to use protecting groups altogether.[1] Selective reactions use slight differences in a molecule’s chemistry to make a reaction happen at only the desired reactive site. This is very similar to the installation of the protecting group in Figure 2.

As more and more highly selective reactions are discovered, our syntheses can be made more efficient by reducing the number of steps required and the amount of waste produced. Looking ahead, protecting groups will be less and less necessary – and that’s a good thing!

 

Appendix – Example from Real Chemistry

A simple, specific example of the use of protecting groups[2] is shown below. Both oxygen-containing sites are reactive, but we only want the one on the left side to react in this case. The first reaction is the installation of the protecting group, (CH3)3SiCl, on the OH oxygen only, protecting the right side. The second reaction shows the reagent, CH3CH2CH2MgBr (for those curious, this is called a Grignard Reagent), which now reacts with just the ketone C=O site on the left, adding the desired new CH3CH2CH2 segment. The last step shows a combination of removing the protecting group to return the OH group, and also removing the [MgBr] segment of the reagent with the help of acid (shown as H3O+), which leaves the desired product with a CH3CH2CH2 chain added only on one side of the molecule.

Principle 8 - real protecting group use in chemistry

This example of a selective reaction uses a protecting group, but this requires 3 steps to only make 1 change. Instead, we can eliminate the need for protecting groups by designing new and more selective reactions that are much more efficient.

References:

[1] I. S. Young and P. S. Baran, Nature Chem. 2009, 1, 193

[2] R. J. Ouellette and J. D. Rawn, in Organic Chemistry, 2014, Elsevier, Boston pp 491-534.